YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHE9_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIYQLALPR SVLPRCRAVR YSRLLHSARC YSQDSQPKPG NTILQQLRKK LEPFCNSTKD  60
   61 KLEQTCAQVR YSSMQLRYHL EKARASVQEA NKKLVQQERE GENSMLTFND DLENKSKIVD 120
  121 LPSERERKRR QWSRKLEFYI DSLQETIFTA TKALNDVTGY SSIEKLRKSI DMMETQLQET 180
  181 KRKLMQLREA HSDAVAVRNQ SQRQVNELLQ RKHMWSPGDL ESFTRLYKED ADNVRRQEEA 240
  241 NASLKAMEAK EEELSNSLHR AILTRYHEEQ IWSDKIRRTS TWGTFILMGL NILLFLVVQL 300
  301 LLEPWKRRRL TNSFEDKVKR ALEDHSLQHN LVLDRLSDRI SEKIDAEMVH GIAPVPLPER 360
  361 TEQPEQPPAA TTSGQPLGLR EALASVGAAI AAEFGFFQAW IADHVRAIGG PTLSALQGFS 420
  421 GWPVLHIDLY NTVIFTCGML LGLLVSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	280	0.97
Transmembrane Helix	281	302	0.94
Cytoplasmic	303	381	0.97
Transmembrane Helix	382	402	0.88
Non-Cytoplasmic	403	423	0.88
Transmembrane Helix	424	445	0.90
Cytoplasmic	446	447	0.82