YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45198875, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQGVVPAA TALGAAATFV VLLWWLVMSG VYTPQLDGVD GVEYWDLSWS RGKADGWAQG  60
   61 DRVLFCVPLR DAAEHLPMFF KHLSEMTYPH NLVDLSFLVS DSKDETMSVL RQHVRELQSQ 120
  121 PDNARQFGNI EIFQKDFGQA IGQSFSDRHG FAAQGPRRKL MARARNWLGS VALKPYHSWV 180
  181 YWRDVDVETV PQTIIEDLMH HDKDVIVPNV WRPLPDWLGD IQPYDLNSWV ESEGGLQLAA 240
  241 DTPDEDAVIV EGYPEYATWR VHLAYMRDPN GDPETEMELD GIGGVSILSR ARVFRSGSHF 300
  301 PAFSFQKHAE TEGFGKLSRA MGYSVVGLPH YVIWHIYEPS SDDLKHMAWM AEEEQRRLEE 360
  361 AQIREFYHKI WDIGFDDVRD DWDIERTRIL KNIDPNVLDR QIQVDWTDDE SVPYEGDRDR 420
  421 RDPAVPLDFD PNNN

Type	Start	End	Confidence
Signal Peptide	1	29	0.81
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	434	0.99