YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DGK1_ASHGO, HSD1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANEEELQTA ESAFVTGARR YSNDYSESES SSKHSGCSTP VEGTPAEAAT TIGARASGGS  60
   61 TTWQRLRQLL MERGSDVHLP VTEIHLKSQE WFGDFITKHE VPRKVFHSSI GFFTLALYVR 120
  121 DVDYRNVRLP LIVGFVHVLL LDVIRLHWPA FNTLYCQVTG LLMRKKEVHT YNGVLWYLLG 180
  181 LIFAFSFFSK DVALVSLFLL SWCDTAASTV GRLYGHLTPR ISRNKSLAGS LAAFVVGVIS 240
  241 CAVFYGYFVP AYSHVNHPGE IMWNPETSRL SLVQLSLLGG FVASLSEGID LFNWDDNFTI 300
  301 PVLSAIFMHT IIAFSQR

Type	Start	End	Confidence
Cytoplasmic	1	167	0.81
Transmembrane Helix	168	188	0.86
Non-Cytoplasmic	189	193	0.71
Transmembrane Helix	194	215	0.81
Cytoplasmic	216	226	0.82
Transmembrane Helix	227	249	0.93
Non-Cytoplasmic	250	296	0.63
Transmembrane Helix	297	315	0.84
Cytoplasmic	316	317	0.53