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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCA2_ASHGO
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIASRYVASE LESVTRKLEL QLYERAAISE VLEQTSTDLE LAKANEVLQT IKEEADACVA  60
   61 AINGGQKFYT IKYDQILSGL ESLSGGQWSV GSPLEPLIRD GISDYLHILL YYALLSKNLA 120
  121 KLPQLLLDQE YYGHVSRCSW FMRLFYGLQI MPVKLIEFFR GHALQELPSK LRQTLRIHNF 180
  181 QLVGLPTQRA WQWTKLPIAM VDTDIIQKTA SLDSQLDINV KKFGKLLREF PRQKSDRLEV 240
  241 LSDFLDLKPG SSEFAVVRAV QKWNVDSCAP QPNWIVRYWP TILIALAGGP AGIAAIWNAR 300
  301 NDIAAFIKHN LFEFARDLVK NWLVEPLRNI WSTVHHDPTS SIAIMSQGTL DTEINSLQRM 360
  361 LIDFLKEHEY ANTVDTSVLM KEIEQGNLTQ FMEIYEAQLR KPIRNLVTGD LIRSLLIQIQ 420
  421 KGKVDGSLAI HGIDKLLQSQ QLVFGIVSIS PALLILYVLC NSLTKLVKYG TVWSKGAKYR 480
  481 RSVSVSLNNV ERLLNSPIEE FDGDKGNWNL GLLTLEMANL REYGAKLVPH SRTAEWCRDI 540
  541 DEMASSSALS TTGKLNVINR IYHVYGKYF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle