YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45198818, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDTTTVAV ALAVVLPVSI AVLIALVFWC KTQRRFKREE QDDEKNRGYD DEVVTFREMR  60
   61 ASSGTLGPDG TPPTACAEGS GSSEGSESEK DPSPTPAPAG RAARTYMPAY RRRLNRSLSR 120
  121 QQSRADEMTT NSSAASYDTQ HAQNAQLSVF EQMVPVLQVD NSSPFANPRD AAFERGSRHS 180
  181 SESLMKSLKN QDFGSYPKRR PSAANTANLA VYNGSVSSFS SRVPSSTTLN CMGDESFYAY 240
  241 EGSVLPRTGR DLPEVKQDVY MLKNNYDVTN NEEITEEDQY ENEFTNYSEN KREFIDSLRP 300
  301 KAERMSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.62
Transmembrane Helix	8	30	0.80
Cytoplasmic	31	307	0.67