YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44984822
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDGNTFIF VIVIIFILMA SPGGDGVTSQ YEFNQMEQLK SQFRDEYTSF KNMFSSSNFQ  60
   61 NITGFKLSYS DAVQDPERNA TYPIDGKSYT TWAPNQEYLL FPDEVRDSVW EHVWRTDDVL 120
  121 ETYPPNITAT LHGNISLVSN NKYVRVPMPI PLFYQPPTDF AQNQPPSGEY YLRSPDDILR 180
  181 YGLHNVTFDV GKVDLSVRHI DTVSPTWRRN SSKSKRFNSQ EDKWKLLRLN MDFADDEEHE 240
  241 RHNVHGYGIY DVQRGQIIVM SESAKCHSLF AFPHYMNLRE DKARYKSLMK LIDDYWEASD 300
  301 YVNTLTMDDL QNWYRDANQK CEYVGFLQLK PWAQYTKDQI KMIDDELFWP IGRPVNISDI 360
  361 PEIEIEAGEL YSPDCGVHLR LGTVAGPRYE VQVRSIRKHL LVGCALFGAQ IYLLILQMQH 420
  421 TNTPSSVNKI SFWCLAMMNL VDGLLGVSFW VASSLRKDLY LSLLMDAIVC MILSGMFEIR 480
  481 YMISVYASQV NERGISVWTL LRGSNAETNP PPAVIADETT ISGSLYTQFI FKQLLCMFLV 540
  541 ISSSSWPKNI RTIFEYVCLA ILNSYWIPQI YRNAVKGNQP RQRRRGARSE NGRNNKMPML 600
  601 WKFIVGTTII RTAPVIYVFT YPSNIFRHHR DIRYAVGLSV WLLLQMLILF LQDTFGARWF 660
  661 LPKSAIPEGY SYHKPLNSTC LLEHGANDNY CVSCAICMSE LAIHVEDIPE THKANIHDYM 720
  721 VTPCSHLFHT GCLENWMSYK LQCPVCRAPL PPL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle