YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44984654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVITEALSFL GLAYITFQSV LEVVIVSFAG FWCTYSGLLP KEGQKIISRL NVDVFTPCLI  60
   61 FSKLAKSLSI AKILEIGIIP VFYAISTGIS FVSGKALAML LHLDVDETNF VVANSIFGNS 120
  121 NSLPVSLTLS LAYTLPGLEW DQIPNDTKDS IASRGILYLL IWQQIGQVLR WTWGYNKLMR 180
  181 WSGERDNEVR QSLLEAQSED AVTLAEAESE LAIRSPTDFD ENSTSAPSIT SIDRLKTTVL 240
  241 HGVNRVRGFM NPPLYAMVLS VIVASIHPLQ HELFHADGFI NNTLSEAVNE LGALSIPLIL 300
  301 VVLGSNLYPS HDVSPKSHNY KKIVFASIVG RMIFPSLLLL PLIAACVKFI NVSILDDPIF 360
  361 LVVGFILTVA PPAIQLTQIT QLNEFFEAEM AGVLFWCYVI LALPMSILVV SGAISVLRWA 420
  421 EA

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.57
Transmembrane Helix	14	39	0.77
Cytoplasmic	40	72	0.55
Transmembrane Helix	73	98	0.72
Non-Cytoplasmic	99	115	0.43
Transmembrane Helix	116	133	0.43
Cytoplasmic	134	250	0.80
Transmembrane Helix	251	271	0.85
Non-Cytoplasmic	272	290	0.84
Transmembrane Helix	291	309	0.86
Cytoplasmic	310	327	0.76
Transmembrane Helix	328	350	0.86
Non-Cytoplasmic	351	358	0.67
Transmembrane Helix	359	379	0.83
Cytoplasmic	380	393	0.68
Transmembrane Helix	394	417	0.90
Non-Cytoplasmic	418	422	0.73