YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.40
Transmembrane Helix	18	37	0.74
Cytoplasmic	38	46	0.45
Transmembrane Helix	47	68	0.63
Non-Cytoplasmic	69	71	0.59
Transmembrane Helix	72	90	0.79
Cytoplasmic	91	115	0.91
Transmembrane Helix	116	136	0.93
Non-Cytoplasmic	137	152	0.81
Transmembrane Helix	153	174	0.89
Cytoplasmic	175	189	0.81
Transmembrane Helix	190	210	0.87
Non-Cytoplasmic	211	223	0.84
Transmembrane Helix	224	242	0.86
Cytoplasmic	243	247	0.50
Transmembrane Helix	248	267	0.63
Non-Cytoplasmic	268	290	0.57
Transmembrane Helix	291	313	0.74
Cytoplasmic	314	342	0.74
Transmembrane Helix	343	365	0.87
Non-Cytoplasmic	366	382	0.66
Transmembrane Helix	383	405	0.85
Cytoplasmic	406	419	0.64
Transmembrane Helix	420	439	0.79
Non-Cytoplasmic	440	449	0.72
Transmembrane Helix	450	472	0.89
Cytoplasmic	473	480	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALKERKEA FVSGLEGGSI AEINLVTTVA LTAYFGWQLL NRRLDSVPLV VDFLLNWAGL  60
   61 LLSITVYAND PVLLNLLIAV PCIVQLQILG RSSQRKTQPQ KGKESARLGL DRKPFITAYR 120
  121 GGMLIITCLA ILAVDFPVFP RRFAKVETWG TSLMDLGVGS FVFSNGLVAA SALLKQEISG 180
  181 QRPPLWSRLV SSVRSAGILL ALGVARLVSV KGLEYQEHVT EYGTSWNFFF TLALVPLAMI 240
  241 LVDPICTYVP RVFIALLLSV FSEYLLQKEG FLQFMIMSKR DNFFNSNREG ILSFLGYCAI 300
  301 FLLGQNTGFY VLGNRPTVNN LYRPSGQSWQ QNRRQRLSAW DKWTSVTPLA GLLAWFFITV 360
  361 ALFQLTMAYH PYTVSRRFAN LPYVLWVAAY NLGFLSMYCM VDSLFNLSQH SNNVPVTLDA 420
  421 VNSNGLFVFL LANCLTGLIN MNMNTLDSTL TVQIAALFGY ATVIASVAII MYKCRIFIKL 480
  481