YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45198561, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKKHEEEC GERAGGKVGS PIVVAASTDS MSMLTKPQLF GIYDEEIVES EDTEIYEEAK  60
   61 KSAGRMLDDM GSVGARSRVR TRSQKYMHLV SSLVILGISG IAYHQLSRNL HDNDLLHEDF 120
  121 TSRPLVLGVK LCQQLSFGML PTWAGYAVEG ILFGSLLPAV DYWRRISVGK VNLSGVLRSI 180
  181 NAMLGVSFGI RRVEWSSSLQ ASGAWFLLDG ILWLFFDGSF SVFLLGFAVG LVTAVTCYEE 240
  241 ITDFSQLLYF IDFYFLGLLF FGRLGRYLYQ R

Type	Start	End	Confidence
Cytoplasmic	1	85	0.99
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	142	0.94
Transmembrane Helix	143	163	0.87
Cytoplasmic	164	174	0.82
Transmembrane Helix	175	193	0.54
Non-Cytoplasmic	194	210	0.48
Transmembrane Helix	211	237	0.81
Cytoplasmic	238	246	0.46
Transmembrane Helix	247	267	0.88
Non-Cytoplasmic	268	271	0.46