YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44984027
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQRRPAVTR SRSQPPAASS DTSVLMSDTE GEETFDSQLR PTSRRTSSIF SLDTSPLDPP  60
   61 NETDIQKFTS NAFHFGMIRN LHLADYITMM NGFCGFYSIV SCLRFTLTGA PHYVQRAHFF 120
  121 ILLGTLFDFF DGRVARLRNR ASLMGQELDS LADLVSFGVA PATVAFAIGF QSTVDVLVLS 180
  181 FFVLCGLARL ARFNVTVAQM PKDITGKSKY FEGLPMPTSL LLVGCMAYLV NEELMGEHLP 240
  241 LGVYGVGEWF EFHPVVLAFF IHGCGMISKS LRIPKP

Type	Start	End	Confidence
Cytoplasmic	1	85	0.97
Transmembrane Helix	86	107	0.89
Non-Cytoplasmic	108	113	0.82
Transmembrane Helix	114	134	0.84
Cytoplasmic	135	149	0.87
Transmembrane Helix	150	170	0.89
Non-Cytoplasmic	171	175	0.76
Transmembrane Helix	176	193	0.93
Cytoplasmic	194	209	0.88
Transmembrane Helix	210	230	0.91
Non-Cytoplasmic	231	249	0.90
Transmembrane Helix	250	271	0.87
Cytoplasmic	272	276	0.90