YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45190859, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTLHQRPE MRNIYSSLPT KSHSNMNHLP KSFFGLPLYI GVELSLGIAI FNKFCGLFGL  60
   61 LALFTGHPLD ILQWLFYLWS FVTLLVYLHG LMQIYQPRLA AYCLVLVVYS TDTILTCLYT 120
  121 LWFTRGWFID GDVGVTATAK EDDADATQGS VTVENEPVSH QSASKSYEYA FTMAFTLFAL 180
  181 SLRFYSNFLI ASFVQRMFQH NKFAAGCDDV EQDLKHKSVA YRAYAKMQRW CYFLCRRYL

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	62	0.70
Non-Cytoplasmic	63	70	0.77
Transmembrane Helix	71	91	0.90
Cytoplasmic	92	99	0.82
Transmembrane Helix	100	123	0.91
Non-Cytoplasmic	124	168	0.95
Transmembrane Helix	169	191	0.85
Cytoplasmic	192	239	0.95