YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45190837, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	167	0.95
Transmembrane Helix	168	189	0.80
Non-Cytoplasmic	190	204	0.65
Transmembrane Helix	205	226	0.75
Cytoplasmic	227	239	0.82
Transmembrane Helix	240	262	0.91
Non-Cytoplasmic	263	279	0.91
Transmembrane Helix	280	301	0.87
Cytoplasmic	302	309	0.91
Transmembrane Helix	310	333	0.88
Non-Cytoplasmic	334	342	0.85
Transmembrane Helix	343	366	0.87
Cytoplasmic	367	393	0.91
Transmembrane Helix	394	418	0.77
Non-Cytoplasmic	419	424	0.70
Transmembrane Helix	425	448	0.79
Cytoplasmic	449	466	0.81
Transmembrane Helix	467	491	0.86
Non-Cytoplasmic	492	506	0.79
Transmembrane Helix	507	526	0.78
Cytoplasmic	527	543	0.76
Transmembrane Helix	544	565	0.93
Non-Cytoplasmic	566	572	0.85
Transmembrane Helix	573	594	0.92
Cytoplasmic	595	614	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQFTHTAD EQRSSVVYSN SIGKGGLFQP RDYIGAKTTT AAEDEVTNLL GDLEQCNGRY  60
   61 VPMQAHGGHD ESDLTPFGTP SHRRTLSMQQ SLLEQERELL IDNKLYDARH GSDCAISLVA 120
  121 SECGSGNGAL LSEQEAQNVM SAWEHAIESG KTITTSYKRE STVLTKNALP LVATFILQNS 180
  181 LSLASVFSVS HLGTKELGGI TLGSMTANIT GFAAIQGLCT CLDTLCSQAY GARNYTLVGL 240
  241 LLQRCCIISL LVFAPVVWLW VCYSEQVLGY LVSDPELCLF AAKYLRIVAA GLPAFILFEC 300
  301 GKRYLQCQDI YHASTIVLLF CAPANAFLNY LLVWNSKVGI GYLGAPVSVV LNYWLMVLGL 360
  361 LLYTIFTKSE IQPRKCWTGW IKPHQIFKNY DKMLGLALPG IIMVEAEFLG FEILTIFASH 420
  421 ISVNALAAQS IIATIASLAY QIPFSISIST STRVANFIGA SLYRSCIITC KVSLLLSFGV 480
  481 SLTSMLAIFV FRSNLAHILF LNEAEVIMLI ETTLPILAVM QIFDSFNAST AGCLRGQGQQ 540
  541 KDWWLLSNVF AFYCIGIPMS YFLSFHCDLG VKGLWYGITC ALIVMSVCQS YAVFNCSWEE 600
  601 LVKAANLRTS EDVF