YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPC2_ASHGO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSVWYGLL HAAAWTRAVS LQVSEDSDEQ WTVALRDSRP IPGGSPLSRC DLDEDHLLDV  60
   61 QEIEITPNPP HRGKNLTVEA RGDLFGPVED GAYVTVEVRL GYIKLLSETF DLCKELEEND 120
  121 LGLQCPLEEG EYELSKTVEI PQQVPPGRYH VVARAYTVDD EPITCLTGDV YFPPLMPAER 180
  181 SRMPRLIDPR RMRRLMDPRR KPRIMDEGSG AAA

Type	Start	End	Confidence
Signal Peptide	1	18	0.77
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	213	0.99