YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45190787, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNKQSNFL INFMMGGVSA AVSKTAAAPI ERVKLLIQNQ DEMLKQGSLD RRYNGIVDCF  60
   61 KRTAASEGVI SFWRGNTANV IRYFPTQALN FAFKDKIKAM FGFRKEVDGY AKWFAGNLAS 120
  121 GGAAGGLSLL FVYSLDYART RLAADSKSAK KGGERQFNGL VDVYKKTLAS DGIAGLYRGF 180
  181 LPSVVGIVVY RGLYFGMYDS LKPLLLTGNL ESSFIASFLL GWAVTTGAST ASYPLDTVRR 240
  241 RMMMTSGQAV KYDGAFDAFR KIVAAEGVKS LFKGCGANIL RGVAGAGVIS LYDQLQLVLF 300
  301 GKKFK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.74
Transmembrane Helix	9	28	0.62
Non-Cytoplasmic	29	112	0.72
Transmembrane Helix	113	133	0.76
Cytoplasmic	134	173	0.84
Transmembrane Helix	174	194	0.87
Non-Cytoplasmic	195	213	0.85
Transmembrane Helix	214	235	0.92
Cytoplasmic	236	305	0.84