YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44983569, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLNNPLPRS LTAETKKAAK VLASFVKPDQ MLGADEVIPP HVLKNAKGLA IITVLKAGFL  60
   61 FSGRAGSGVI VARLADGRWS SPSAIALAGA GAGGMVGVEL TDFVFILNTA DAVKSFSHAG 120
  121 SITLGGNISV AAGPLGRNAE AAATASLGSV AAVFSYSKTK GLFAGVTLEG SVIIERREAN 180
  181 RKFYGSNCTA KAILSGSVSP PPGVDPLFRV LRSRAFNHTS SRSGTEEPYF RDDDYYGDIP 240
  241 SNLDSEGNSR RNSWRNSFRR SRHGVEGYHD DVGGYDGCSD DDNVSDYYTN RRRGDGSALS 300
  301 NSTLSGNLRS STKWEDDEYD QGIVNTSGKP EQNSQRRAPA RPTSAKPDFG SHSTSSGAIP 360
  361 KAVALYTFKG EQKGDLPFRK GDVIMILKRT ESQDDWWTGR INGQEGIFPA NYVDLV

Type	Start	End	Confidence
Cytoplasmic	1	51	0.59
Transmembrane Helix	52	72	0.42
Non-Cytoplasmic	73	416	0.63