YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG27_ASHGO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYVRCVLLT GALFNIAAGL KCADSKVLSR YKVSQHAAKG KFTESTPPSE TTDFWWINLC  60
   61 EEHSEPVPDK CKDDAMFCHR QQVKLDDGKE YVTQVFDVPR NQEVDVEELR DGFQVSFTGK 120
  121 WGERERKVKV RYTCADDKAE DEVSAEGAFG AHTTPVEVAL RGPSGCIQAT EKSSGIGGWI 180
  181 TWLVIYAVLL TLIYLLAKSY MSVGHGSMQD FREEFVERST NLVSSLPEFA KEVMGKGRCG 240
  241 GPPPSGGRIQ GQFYRGTKGK IPDFLSRYHM LCVIITSAHL WTAFFSASME FSTVVSR

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	175	0.98
Transmembrane Helix	176	197	0.91
Cytoplasmic	198	264	0.96
Transmembrane Helix	265	285	0.87
Non-Cytoplasmic	286	297	0.83