YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI7_ASHGO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	393	0.99
Transmembrane Helix	394	416	0.94
Cytoplasmic	417	423	0.90
Transmembrane Helix	424	445	0.91
Non-Cytoplasmic	446	450	0.89
Transmembrane Helix	451	468	0.69
Cytoplasmic	469	509	0.72
Transmembrane Helix	510	527	0.66
Non-Cytoplasmic	528	531	0.45
Transmembrane Helix	532	551	0.59
Cytoplasmic	552	592	0.52
Transmembrane Helix	593	612	0.79
Non-Cytoplasmic	613	623	0.71
Transmembrane Helix	624	646	0.89
Cytoplasmic	647	665	0.79
Transmembrane Helix	666	685	0.85
Non-Cytoplasmic	686	705	0.79
Transmembrane Helix	706	727	0.95
Cytoplasmic	728	747	0.81
Transmembrane Helix	748	770	0.93
Non-Cytoplasmic	771	781	0.73
Transmembrane Helix	782	804	0.72
Cytoplasmic	805	806	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFKEVGLLF CQLLAVLIFA AGFFPQKKVL KGDAQFQYMA ETQRALEPAF DKLVLVVIDA  60
   61 LRADFLFQQN VSHFDFVHEL LNRGEAWGFT AYSNPPTVTL PRLKGITTGS APNFLDAILN 120
  121 VAEDDSSSNL KDQDSWISQF AKHGKKIHFF GDDTWLKLFP EEFFQKHDGT NSFFVSDFEE 180
  181 VDTNVTRHLP HELQHKDWDV LILHYLGLDH IGHKGGAASQ FMPPKHREMD AVIRQIYDQV 240
  241 DNRTLLCVMG DHGMNDLGNH GGSSAGETSA GMVFISKMLS SYPRPAAQDG VSSPVTAAED 300
  301 YQFFTRIQQV DFVPTIASLF NIPIPKNSLG VFVREFSSLL GQHATTKIIE NYHQLMQLAA 360
  361 KKTAARGNDD IDSMLAEMKD VQATLARTAT NYNYAMLFLG VGMLSIVTAA TAYCYISSAR 420
  421 LNEASVLMIA VTALLGSSVF GSSFVEEEHQ IWWWIIIAVV GYSWATRPSC TPSHLVFLVC 480
  481 ARLLRGWNNS GQKFMYDFTV AELLKSHPSI KWLLVCATLA VVALDGFTER PLLSIFNLLA 540
  541 GLLWFVYKTC WANVNGEVSP TYAQTLVTKA CSLLFAGGTP WDDKQLLVPL ARLFFKVTAA 600
  601 IVCMRIAYNV VFAKRKFLSE LFPLFTIVLI MQTASQNIPL FLVFTIMRSS LRNILRVGYP 660
  661 QQRCEMFFVL SLILQNLSFF QFGGTNSIAT IDLTNSYNGI SENYNIYVVG LLMCIGNMAP 720
  721 AIYWSLAAVV DHQLYSKKSY AQQKLSSMFF YSVNSLLLLV ACICMRYHLF IWSVFSPKLC 780
  781 YLLGWNILIH FLTETVLEPF LLMVAG