YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45190388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGAHPTYLR LETVLQELSG ARGCSIEMLT GGRLLLEGAY GRQERQVTRP AWYIKCADEQ  60
   61 QYGPLEQALK AADLEQLPYQ FEKDTFQRGS LMVAFTLSSV CAGAWMLLLV LALLPVNNHN 120
  121 TRRRLVALYA VFYAVTQTVL LQMLTREIFE KQYRGNYQRS YELNAVTQSA MLCTFRLITT 180
  181 IFANLTWVQI VHYMLHNYRK TTHRWVPRWL DTNSKRVQWL GSFLCLSHAI IWGLNLFLNV 240
  241 PVFIPEIGEY RRTNLPLYIP HIAFESLLFL LFAISLCYYL YHDLGHSLMF HRQNREHHED 300
  301 ESVFTKLRLI CQEYLSTIPV IVYNLVVFAL YLVCFFVNTI KYHSNLLWLF TLTTFLRLLI 360
  361 TVNTWGLIGI LERRERVVSK QTVLGRKINN KDRFFADPYS NTDYRGDSVN GERRLQGVAG 420
  421 QRIGMFQAET AGISSVLSKM AGAVSAWFCW CRAPSSPTAG EPGTPENMEL QHIKTENESV 480
  481 DSGETELERN ILFTHGA

Type	Start	End	Confidence
Cytoplasmic	1	90	0.60
Transmembrane Helix	91	114	0.90
Non-Cytoplasmic	115	124	0.54
Transmembrane Helix	125	145	0.78
Cytoplasmic	146	164	0.44
Transmembrane Helix	165	179	0.45
Non-Cytoplasmic	180	180	0.01
Transmembrane Helix	181	196	0.65
Cytoplasmic	197	216	0.68
Transmembrane Helix	217	238	0.87
Non-Cytoplasmic	239	258	0.64
Transmembrane Helix	259	282	0.89
Cytoplasmic	283	314	0.69
Transmembrane Helix	315	340	0.81
Non-Cytoplasmic	341	345	0.65
Transmembrane Helix	346	369	0.88
Cytoplasmic	370	497	0.68