YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45190323, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCLVVTKS VATATLGIYT GMVVTRQLVL SPQEWIGVRK SAQKNAFGGS ELYSLASGAL  60
   61 ASVSTLFFGV SYFGAPVHWR HPYLLYCALG IPLTWALATV GNCERTHLLA KLLGCGAGAG 120
  121 HTSAAEEEDT TSAGEEHDDI ISEDSIVDLS RHTSSEDHSA AKDATACAAA APGCAFARYT 180
  181 SALVAVLVFA ANVVGCLGEA L

Type	Start	End	Confidence
Cytoplasmic	1	51	0.68
Transmembrane Helix	52	74	0.89
Non-Cytoplasmic	75	81	0.73
Transmembrane Helix	82	103	0.86
Cytoplasmic	104	178	0.83
Transmembrane Helix	179	198	0.62
Non-Cytoplasmic	199	201	0.57