YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44982762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAGPNREDE EQSMATKSGS TSRKVQKRPS LTQLNGRRAE EDMVRATSLN AYSLKPTTVP  60
   61 PFALDAQFKR LRVRDSLGVS GDMLANGGQR FKDPFLVSYD SQWSEFVNVI DAEGGHGKRH 120
  121 KASHGTHSHS TLSSTSDSSG LSPLKNEKLR AITEHSPTRR GSSQSVLTDL ESNWGGEERL 180
  181 NAIFEAPILH DYEFKDQKDR NEWTKYISQL KHFYYGSIFK SGGSSRGGSN SESDDDDEVG 240
  241 RIQAFVERHK LEFRRKKLYW LQFEQRKKQQ WGPQMRRLLI DSQYLPLSFR LIIIMLTCVA 300
  301 LGLAVRIFQN SHNRIEDTSP LTVPQQPSTI MAIVVNTVAI VYLAYIAYDE FAGKPLGLRN 360
  361 PLGKMRLILL DLLFIIFSSA NLSLAFNTLY DKTWVCTGLE DSPNRIPKID YICRKQRALS 420
  421 AFLFLVVVMW VITFTISILR VVERVSSLSP R

Type	Start	End	Confidence
Cytoplasmic	1	285	0.82
Transmembrane Helix	286	308	0.90
Non-Cytoplasmic	309	327	0.79
Transmembrane Helix	328	348	0.91
Cytoplasmic	349	366	0.81
Transmembrane Helix	367	389	0.88
Non-Cytoplasmic	390	418	0.83
Transmembrane Helix	419	442	0.89
Cytoplasmic	443	451	0.83