YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44982761
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTTIKKVV TAYSRMAEPR RTQEYLADPL KIVAVPVTTQ RCFFYFKHTD DYLDRGSRLV  60
   61 RAEQRVTRKV ARTWAKMESS RNVVTVRVVG WVNVLLAQVP WRERSLASFP SESYILKRVH 120
  121 LQGKEETEKR LTLREAQACE AGVAAAPIVV YFPRSVISES VLNDELVRLL REGKQTHMRY 180
  181 LIYCLLALPL TIPIALVPLV PNIPGFYLAY RAYCNFKAYS GARHLESMMQ GDMQPLRFAD 240
  241 LQEYSALMAD NVAPATPGES ERMLLDQALL PRILDNLQIH ELRRHIETAM RQEAMRLEEQ 300
  301 AQHKAE

Type	Start	End	Confidence
Cytoplasmic	1	179	0.79
Transmembrane Helix	180	200	0.77
Non-Cytoplasmic	201	306	0.90