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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33086600
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLKVDQE VKLKVAAQLR PPHPSFRTPS SRICSPLPMS SLSPWGHQEP ILNIHDLTQI  60
   61 HSDMNLPVPD PILLTNSHDG LDGPTYKKRR LDECEEAFQG TKVFVMPNGM LKSNQQLVDI 120
  121 IEKVKPEIRL LIEKCNTVKM WVQLLIPRIE DGNNFGVSIQ EETVAELRTV ESEAASYLDQ 180
  181 ISRYYITRAK LVSKIAKYPH VEDYRRTVTE IDEKEYISLR LIISELRNQY VTLHDMILKN 240
  241 IEKIKRPRSS NAETLIHSWT HPGQSQPFAD LSPEELTAVM SFLIKHLGPG LVDAAQARPS 300
  301 DNCVFSVELQ LPAKAAALAH LDRGGLPPVR AALAIIFFGG QPKPNVILNP GSPVQHTGKL 360
  361 SDISLWTFTF GHGVFGDLRI FDIRFKGSGG LGDSQFPAHP PMLGTYQHSD CGKHVQPQTH 420
  421 PGQSQPFADL SPEELTAVMS FLIKHLGPGL VDAAQARPSD NCVFSVELQL PAKAAALAHL 480
  481 DRGGPPPVRE ALAIIFFGGQ PKPNVSELVV GPLPHPSYMR DVTVERHGGP LPYYRRPVLT 540
  541 REYQDIQEMI FHRELPQASG LLHHCCFYKR QGHNLLKMTT APRGLQSGDR ATWFGIYYNL 600
  601 SGAGFYPHPI GLELLVDHKA LDPALWTIQK VFYQGRYYES LTQLEDMFEA GLVNVVLVPD 660
  661 NGTGGSWSLK SSVPPGRAPP LQFHPEGPRF SVQGSQVRSS LWAFSFGLGA FSGPRIFDIR 720
  721 FQGERVAYEI SVQEAIALYG GNSPASMSTC YMDGSFGIGK YSTPLTRGVD CPYLATYVDW 780
  781 HFLLESQTPK TLRDAFCVFE QNQGLPLRRH HSDFYSHYFG GVVETVLVVR SVATLLNYDY 840
  841 VWDMVFHSNG AIEVKFHATG YITSAFFFGA GEKFGNRVAE HTLGTVHTHN AHFKVDLDVA 900
  901 GLKNWAWAED LAFVPMNVPW QPEFQMQRLQ VTRKLLETEE EAAFPLGNAT PRYLYLASNH 960
  961 SNKWGHRRGY RIQILSFAGK PLPQESPIEK AFTWGRYHLA VTQRKEEEPS SSSIYNQNDP1020
 1021 WTPTVDFTDF ISNETIAGED LVAWVTAGFL HIPHAEDIPN TVTVGNGVGF FLRPYNFFDE1080
 1081 DPSFYSPDSI YFRKDQDVTD CEHSNAIPNK DPWPLPKVGG SIRLLGREIE EYYLPPPGSL1140
 1141 ETHSHDAQLW TEELQCEYVV VSSVLASKRE GMSGLYSAEG GSLDIVLLKG GTDCTFWPLS1200
 1201 LMFSQTPGYL SVEKCPVTSL RPTAGVEQSL PEIAGGDEKP DLTSRCKEHI PEDVRVDRFQ1260
 1261 CGMLILFGQR PYWWVLDTDY YSNSSVPLIK QFPVTCETGP GSPSGHAMGT AGVYYVMVTS1320
 1321 TLAIFRGKKK STYGFRICKM KQDPHTNRKI KLGGKMHVIG MQDETGPNTP TGKLNSAHLW1380
 1381 NDGRLPVATP IPHRSFSHTG IAVAETFSHI RGIYNASLQR YCLITFFLFG FALGFYLLLK1440
 1441 GLGVDLLWTL EKAKRWCERP EWVHLDTTPF ASLFKNLGTL LGLGLALNSS MYRKSCKGEL1500
 1501 RKSLPFRLAC IVASLGLLHL FDSLKPPSQI ESIFYILSFC KSATVPFASH VSPRIKYRLS1560
 1561 GCQRRRQERA HSALCCSITR DGFLGLILLK DPEVGKQLKK QKKRKALYEI PDELTRLDHN1620
 1621 TVSEEAKGLN FATMMVFQTF 

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