YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33086568
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRAEALEK GDQFVGYGNN HDWRYKGSDN NTFQECSHYL FSKEITSGCQ IQKEDIQLYQ  60
   61 TFVVQLQDPQ KPQRRAEQKL NLQNLVIPWA PENLTLYNLS ESQVELRWKS RYIERCLQYL 120
  121 VQYRSNRDRS WTEQIVDHEP RFSLPSVDEQ KLYTFRVRSR FNPICGSTQQ WSKWSQPIHW 180
  181 GSHTAEENPS LFALEAVLIP VGTMGLIITL IFVYCWLERM PRIPAIKNLE DLVTEYHGNF 240
  241 SAWSGVSKGL TESLQPDYSE RFCHVNNQEF LVNTNCSVLL LLHYTRKKMG LRKTDTIDLC 300
  301 DESGTMKLLF LSKTPGDYAS KFLTARNTYY VCKVERGAPG TRIENSYKAI VPLLKHPEPE 360
  361 LVESLRTQCE FLERSRIKML RTLEAKRLAA MESSVNLPAR SPKSGGTQQT PSPSSQLKSK 420
  421 GGRSDEDGPP PTRRPFYKTR ADFLKRHR

Type	Start	End	Confidence
Non-Cytoplasmic	1	195	0.87
Transmembrane Helix	196	217	0.90
Cytoplasmic	218	448	0.84