YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33086524, gi|...
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGLDQGGP ARCAGAGPGP PLLLRDSILA FVLQMTGSNE FKLNQPPEDG ISSVKFSPNT  60
   61 SQFLLVSSWD TSVRLYDVPA NSMRLKYQHT GAVLDCAFYV ENLVGTHDAP IRCVEYCPEV 120
  121 NVMVTGSWDQ TVKLWDPRTP CNAGTFSQPE KGYVLSSIEG RVAVEYLDPS PEVQKKKYAF 180
  181 KCHRLKENNI EQIYPVNAIS LSQYPQHICH SNDGTTLAIA SSYMYEMDDT EHPEDGIFIR 240
  241 QVTDAETKPK SSRKSSVNIC GLSQDGHRLA ASSWRLAVPG LWSSRIPVLT IPPSADTAKR 300
  301 QAPLDIATNC YSKFPDVHTA VTLVASMHKS RTGVITLLVF VTTYLMRSTI KEESLLLLVV 360
  361 KGGKVHHGGE GKSGSPKSQK HFLLALQFFI WHNSNSNNNN NSNNNNSNNN NSNNNNNSNN 420
  421 SSSNNSNSNN SNSNNSSSNS TSNNSNSNNS NSNNSNNNNN NSNNSNSNNS NSNSNNSNNK 480
  481 NSNNNSNNNN SNSNSNNSNN SSNNSSSSNN SNSNNNSNNS NNSNNSSNNS SSSNNSNNKN 540
  541 NSNNNNSNNN NNSNSSSSNN NSNSNNNSNS SSSNNNSSSN NNSNNNSNNN SNSNNHHHHP 600
  601 GNLAAAPLIC IGIFLLLQAL KGLNDTML

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle