YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33086474
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKIAGRLE KESALSRASD ESLRKVQEAE SPVFKELPGA KASDDSAVPL TSLAGEAAGA  60
   61 SEGTEKLVGD TVSYSKKRLR YDSYSSYCNA VAEAEIEAEE GGVEMRLASE LTDPDQPHED 120
  121 PAEDEKEEKD SAEVHLLFHF LQVLTACFGS FAHGGNDVSG FTIELASAFT VVIASNIGLP 180
  181 VSTTHCKVGS VVAVGWIRSR KAVDWRLFRN IFIAWFVTVP VAGLFSAAIM ALLMYICGFV 240
  241 SSSRLPLGPE LFSSWDTQGN PSRLHRGSNA AAELDG

Type	Start	End	Confidence
Cytoplasmic	1	135	0.96
Transmembrane Helix	136	155	0.85
Non-Cytoplasmic	156	167	0.72
Transmembrane Helix	168	191	0.68
Cytoplasmic	192	210	0.76
Transmembrane Helix	211	236	0.90
Non-Cytoplasmic	237	276	0.87