YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58336738, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.99
Transmembrane Helix	109	130	0.89
Non-Cytoplasmic	131	151	0.85
Transmembrane Helix	152	175	0.86
Cytoplasmic	176	183	0.79
Transmembrane Helix	184	205	0.88
Non-Cytoplasmic	206	221	0.83
Transmembrane Helix	222	241	0.63
Cytoplasmic	242	250	0.60
Transmembrane Helix	251	274	0.87
Non-Cytoplasmic	275	290	0.59
Transmembrane Helix	291	316	0.74
Cytoplasmic	317	336	0.57
Transmembrane Helix	337	359	0.88
Non-Cytoplasmic	360	366	0.52
Transmembrane Helix	367	388	0.73
Cytoplasmic	389	395	0.61
Transmembrane Helix	396	418	0.85
Non-Cytoplasmic	419	435	0.58
Transmembrane Helix	436	457	0.93
Cytoplasmic	458	649	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHKKVAERV IKDVGRDNII AGAHCATRLR LVLKDDSKVD QKALDNDPDV KGTFKTNGQY  60
   61 QVIIGPGDVN DVYDEFIKIT GLKELSTDDL KKVAAEGQKK NPIMDFIKLL SDIFVPIIPA 120
  121 LVAGGLLMAL NNFLTSPGLF GPKSVVQMAP NVAGISSMIQ VMSAAPFIFM PILVGMSAAK 180
  181 RFGANQFLGA TIGMIMTTPG LGGATKFWDI FGLHVAQTNY QYQVIPVLVA VWVLSIFEKY 240
  241 FHKHLPSAVD FTFTPLLSIM ITGFLTFTII GPVFKGVSDA ITNAIVWLYD TTGAFGMGVF 300
  301 GLSYSAIVTT GLHQSFPAVE TQLLAAFAKN PASSGDFIFV TACMANVAQG AATFAVYFLT 360
  361 KNKKMKGLAS SSGVSALLGI TEPALFGVNL KYKFPFFCAL IGSGVAAAFA GLMHVTAAAL 420
  421 GSAGFLGFLS IYPRTIPMWV VSVAISFAVS FILTYVYGKS HLKEEVAEQD VPVNDATDYA 480
  481 EETQKAEKIG KEQLALKDEI IYSPVDGTPE SLTKVNDQVF SAKLMGDGAA VIPSDGTIYA 540
  541 PVTGTVTIAY ETKHAYGIKS DDGAEVLIHI GLDTVNLKGE HFESFVKQGQ RVEKGDKLGS 600
  601 VDLDAVKKAG YDTTVMVVIT NTANYANVQR ITDAGDKHGD KLIAVTAHE