YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44982465
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQDQNRLFR LPFHLPHRLV TRKGGVYLAG ALYVLGIWLF VDCLLYSKYV NPSKLHVTFV  60
   61 DWIPVLCSTS GMLVVSMIDK NRLLEDALAS GSFVGSNQRA WQAQMVLFLG FALLAGGFAG 120
  121 ALAVLVLKFL VKGYNTYPVL TMGVNNVLGN LFIMLSCIVL WMAQSVEDEY SYSLTL

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	41	0.86
Non-Cytoplasmic	42	57	0.74
Transmembrane Helix	58	78	0.74
Cytoplasmic	79	104	0.66
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	141	0.56
Transmembrane Helix	142	163	0.88
Cytoplasmic	164	176	0.67