YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45187684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	164	0.50
Transmembrane Helix	165	187	0.85
Cytoplasmic	188	309	0.74
Transmembrane Helix	310	329	0.74
Non-Cytoplasmic	330	330	0.40
Transmembrane Helix	331	353	0.75
Cytoplasmic	354	403	0.74
Transmembrane Helix	404	426	0.86
Non-Cytoplasmic	427	434	0.70
Transmembrane Helix	435	458	0.86
Cytoplasmic	459	469	0.58
Transmembrane Helix	470	491	0.73
Non-Cytoplasmic	492	504	0.77
Transmembrane Helix	505	526	0.87
Cytoplasmic	527	535	0.86
Transmembrane Helix	536	558	0.90
Non-Cytoplasmic	559	599	0.91
Transmembrane Helix	600	621	0.92
Cytoplasmic	622	689	0.96
Transmembrane Helix	690	708	0.85
Non-Cytoplasmic	709	724	0.78
Transmembrane Helix	725	748	0.77
Cytoplasmic	749	760	0.68
Transmembrane Helix	761	781	0.91
Non-Cytoplasmic	782	800	0.77
Transmembrane Helix	801	820	0.94
Cytoplasmic	821	827	0.74
Transmembrane Helix	828	849	0.90
Non-Cytoplasmic	850	855	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGAMSPIK SNPDSIRRVF SVEDNSNEIQ NDVRKQGYQE GVALLSKSRA GMSNASTPQL  60
   61 QSAVPALCDH RHNLRGISED QGQFSGSDWE AEVIPQALGD QESIRTVESF TLRERQHAIN 120
  121 ETHPFGIRIW KPALYKKYRS VQQAANEDIH ETKYRHISLV LHLSNIVWSA TVGIFLFTIL 180
  181 YLAGLSVRIF GLLSQSASDY STIFFKLGRY LLWPFGKVVY IVSDEQYLQE DKDEGVSIQQ 240
  241 FYKWISGKGN RLFYHNSGAD NHSSMAFERE LPYGSITREF AESNLISDGC PDTDAGDSIP 300
  301 HRRLFGRGQW TIGRIVFYLI FHVFIQPIMM ILVLVLWLGV FTIPMSNIIW NLMYHCRRHP 360
  361 LALDFKHVQH THQYPDDETI GDKNVLLCTF RCAGWHYYKF TVDGTNVIVM NLISIVIFTI 420
  421 FDFYFLKRYL GLQLWITGDF NIFCLCLLSI IPLAFYIGQA VASISAQTSM GLGAVINAFF 480
  481 STIVEVYLYC VALKQSKGLL VEGSMIGSIL AAVLLLPGMS MCGGALNRKT QRYNPASAGV 540
  541 SSAMLIFSML VMFVPTIFYD LYGDWDLICE GEVPLEAKER CRFAQPPLKF DSLYLHVLKP 600
  601 VSIICAVVLF LAYMIGLWFT LRTHAAMIWQ LPISDQHQDI HAQLQAQQAH SFLQSPKNPV 660
  661 APQCRDIQRY NVAEEPKGHA APNWSRNKST WILLCATLFY AIIAEILVDC VDEVLKEIPS 720
  721 LNPKFLGLTV FALIPNTTEF LNAISFAMHG NVALSMEIGS AYALQVCLLQ IPALVIYSLV 780
  781 YTSGLDHSLI KIREQMFTLV FPQWDLIACM ISGFLFTYLY AEGKSNYFKG SILILLYIVI 840
  841 TVVFYYQGFI DDNYW