YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44982444
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVGRTQLLL LLASSVTAAS PEPGRLSVDL VENEVVNGDI EGMMPVNKAP ADDVAAAAAA  60
   61 APAVAPAAAP AQANQPAAAA PAAQANQPAA AAPAAQANEP AAAAQANQPA AAAPAAQANQ 120
  121 PAAAAPAAQA NQPAAAAPAA QANEPAAAAQ ANQPAAAAPA AQANQPAAAA PAAQANEPAA 180
  181 AAQANQPAAQ ATHSKSTTAS PTKAKDGSES TGVPDPSTIL DYWTHDGVWH TTDSYATIID 240
  241 HGSFKTTLRQ TTSYWFHTTL PDGSVSAYQS AYFQPFSKLY ESVDTPKSGE VGMGTLSGSI 300
  301 GVVKPPVYVD NQGGAGTIQN NISLFSLCGT VLLVMSLL

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	338	0.99