YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44982225
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAYKYPVGA ARRQLQANIR TCKAIVNILV RKASYTTGRQ FAVARRPPKW YGLGIFGASF  60
   61 GLGWLITQHL SYADLMAWLF YDQLPADDEK VRNYQAGLLQ RAHELPATKD LFESGFRQVF 120
  121 PERGQRNVLI NQTLRRPGAL SIEPLFFYNP KTKTTVGIYH LGMRLTGYPF LVHGGILATV 180
  181 LSDLMREAVT FVTGTDYEVT EHIKISYCFP TLANQFVVVR TTRVEDHGNN VRLEAEIINQ 240
  241 SGTRTLVRAK GSFTTG

Type	Start	End	Confidence
Cytoplasmic	1	49	0.93
Transmembrane Helix	50	70	0.90
Non-Cytoplasmic	71	164	0.95
Transmembrane Helix	165	182	0.59
Cytoplasmic	183	256	0.65