YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44982212
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	171	0.85
Transmembrane Helix	172	191	0.90
Non-Cytoplasmic	192	198	0.67
Transmembrane Helix	199	219	0.89
Cytoplasmic	220	276	0.77
Transmembrane Helix	277	298	0.89
Non-Cytoplasmic	299	305	0.58
Transmembrane Helix	306	324	0.77
Cytoplasmic	325	336	0.90
Transmembrane Helix	337	356	0.90
Non-Cytoplasmic	357	372	0.85
Transmembrane Helix	373	393	0.85
Cytoplasmic	394	408	0.71
Transmembrane Helix	409	430	0.89
Non-Cytoplasmic	431	482	0.91
Transmembrane Helix	483	502	0.92
Cytoplasmic	503	558	0.93
Transmembrane Helix	559	579	0.93
Non-Cytoplasmic	580	584	0.86
Transmembrane Helix	585	605	0.94
Cytoplasmic	606	614	0.74
Transmembrane Helix	615	636	0.84
Non-Cytoplasmic	637	668	0.91
Transmembrane Helix	669	691	0.82
Cytoplasmic	692	707	0.83
Transmembrane Helix	708	725	0.78
Non-Cytoplasmic	726	734	0.67
Transmembrane Helix	735	754	0.92
Cytoplasmic	755	765	0.78
Transmembrane Helix	766	786	0.76
Non-Cytoplasmic	787	791	0.52
Transmembrane Helix	792	808	0.60
Cytoplasmic	809	817	0.54
Transmembrane Helix	818	839	0.95
Non-Cytoplasmic	840	885	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLSGEFKG SPPYFNEDKD SSSLSPSLPS QDDKKYKYNV SADAQETKEV LTEDQLIYIT  60
   61 TRMGYEHATD LEHIPESVRY LESKLADLDV EKCCEIIDVH IKEHDQDPNL STEDWNDLVR 120
  121 FSKRDFDPKN PQQVFELKVV AAIFHYYSPY VEVRAVASPV DDPTIPVETF RAYFLATLWV 180
  181 VIGSGFNMFF AQRQPAISLG VFAVQMLVYP CAVLWVRVMP CWGFKVFGRR IALNIESQWS 240
  241 EKEQMFVTLL YSITNGAFYS EYNIVTQQIH YKSPMSYAYQ FLLSFSLQFL GFGLAGIMRR 300
  301 YVVYPSIALW PSSMTTIALN KALLSSDHSN GIGRKKMFYI TATAIFVYNW FPTYLFEALS 360
  361 TFNWMTWIKP DNFSLATVTG GINGVGLNPI STFDWTNIGT SSLYLPFRVT LTTYLGGLLA 420
  421 ALVTLGVYYM NYRECQFLPI FTQSLYNNRA TSYRVEEILT EDRKLDEQKF QKYGFPYYTA 480
  481 GNIVAYGCFM CVYTALVVTS ILQQGAFYGR VYKTWILDLW SLRKPSSWRA VFSNDKHVLD 540
  541 DFHDSHSRMM RKYKEVPEWW YMTIFIVSIV IGIIVVKVFK TNTPVWGLFL AVALNFVLLL 600
  601 PITLLQATRG VTIGLNLLLQ MISGLALPGN PYALMFIKAF GYNIDGQADN YLGNMKLAHY 660
  661 AKIPPVPLFR GQLLMVLIQI FVNLGVINWQ LHNIENYCDP KQRFKFTCPG IRTYFNASVM 720
  721 WGAIGPKRIF EHVYPIMKWC WLIGACVGLF FGLWKKLSIM YKKIPYPDRF SPVIFIIGML 780
  781 SFGPPYNLQY TTSGLYVGFI SMCYMKRYHL RVWERYNYVV AAGISCGLVF SAIVMFFTVQ 840
  841 WKGVEISWWG NTVSYAGLDY ARVPLLNVTE TERGYFGPEL GQIPG