YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45185945, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQASDNIP NIRGRRPRGV SDHSGAKLPQ YDPGSHPPGY FKPYMSAFRF KCREYLLPFT  60
   61 ANQSDYIALL QRQYRTPWRD SYFAYTALLG SHMFYVIALP IPRWLGYGVV TRDLVYVLGY 120
  121 SIYITGYLKD YFCLPRPASP PCHRIALSKY TTKEYGAPSS HCANATAVTL LFLVYAWRSR 180
  181 MDCSALQFFL CLVLLAVYYV TLTLGRIYCG MHGLLDIVTG SAIGVFCFTV RLITRDYLSF 240
  241 DQATAQFSWW FPFFAVAIGL LMLFYHVEPV DPCPCFEDSV AFIGVITGIE AAEWLFPRLF 300
  301 HETTSQYLVF QWSYVAIPAA CARIVAGILC VLLWKSVLSK KLVYSLLSVL MTDDRPAAHA 360
  361 EHPRTGHVRP LVPRIDILGR FFVYMGVPMT VIIVCPTVFA LLGI

Type	Start	End	Confidence
Cytoplasmic	1	81	0.97
Transmembrane Helix	82	101	0.92
Non-Cytoplasmic	102	156	0.76
Transmembrane Helix	157	177	0.77
Cytoplasmic	178	184	0.72
Transmembrane Helix	185	205	0.90
Non-Cytoplasmic	206	212	0.59
Transmembrane Helix	213	234	0.88
Cytoplasmic	235	246	0.72
Transmembrane Helix	247	267	0.92
Non-Cytoplasmic	268	313	0.80
Transmembrane Helix	314	334	0.93
Cytoplasmic	335	380	0.89
Transmembrane Helix	381	402	0.94
Non-Cytoplasmic	403	404	0.81