YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45185691, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.95
Transmembrane Helix	58	82	0.84
Non-Cytoplasmic	83	161	0.88
Transmembrane Helix	162	184	0.81
Cytoplasmic	185	193	0.78
Transmembrane Helix	194	215	0.84
Non-Cytoplasmic	216	237	0.54
Transmembrane Helix	238	252	0.35
Cytoplasmic	253	254	0.25
Transmembrane Helix	255	274	0.76
Non-Cytoplasmic	275	281	0.38
Transmembrane Helix	282	305	0.86
Cytoplasmic	306	349	0.46
Transmembrane Helix	350	371	0.87
Non-Cytoplasmic	372	375	0.55
Transmembrane Helix	376	397	0.87
Cytoplasmic	398	416	0.47
Transmembrane Helix	417	437	0.78
Non-Cytoplasmic	438	444	0.58
Transmembrane Helix	445	464	0.77
Cytoplasmic	465	495	0.75
Transmembrane Helix	496	517	0.93
Non-Cytoplasmic	518	527	0.72
Transmembrane Helix	528	547	0.97
Cytoplasmic	548	563	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQGRLRDKP RMEGAPPSKE PGQKGIATDA KKPGLKEAFF ASPLYDFLYP LRPVTNQWAA  60
   61 KYIIVIFALI IRLAVGLGGY SGMGKPPMFG DFEAQRHWME VTQHIPVSKW YFHQLQYWGL 120
  121 DYPPLTAYHS YLLGKLGSYI SPEWFSLHAS RGYESEDLKS YMRLTVILSE LCFYIPAVLY 180
  181 FTRWIGRRRQ QSPIGQYIAG AAILFQPALI LIDHGHFQYN CVMLGLTVCA INNLLDQYYA 240
  241 LAAVNFVFSL GFKQMALYYA PVMFVYLLSR SIYYPRLNIP RFVAVAVATL IAFGVLYAPL 300
  301 YLLGNISAIF QSIHRVFPFE RGLFEDKVAN FWCVTNVLVK YKTKYTTSQL KFFSLVLTSA 360
  361 AMLPSLIITF LYPKKFMLPY ALAACSMSFF LFGFQVHEKT ILVPLLPITL LYTSTDWNVL 420
  421 SMVAWINNIA LFTLWPLLKK DGLSLQYAIM FLLSNWLIGN FSFITPTFLP KVLTPGPSVS 480
  481 DVADGYRRRS LLPSNIIWRI IIVVSYICVG AIHIAELWYP PSQRLPDIWV LANCLVGCSS 540
  541 FALFWMWNNY KMFAMRNSTI SDL