YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GET2_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVSEAEKR RILREKRKQK FSKGAGSARL HKITTQQPGG ASGDSTVTSA EISDNEGSLQ  60
   61 RGSNSGQSTR EIDDLLAAMD PPIEPAEPLE SAAPEVAFIQ QLMKMQQGSA TPPADEKAGG 120
  121 LFSPLLERLA EQEAGGAPVV SGEVGVHQFQ VRQLKAYMLL LRWAILLPFI YYVMHPGTAH 180
  181 WLHTSRFLHF VMEPRNFFMV FTTFEVASIS IYYQVLLTLE RTNKVNSLSY SSKLVTWAGL 240
  241 VPDGMLPIDN LQGKVVVALH YWDILSMYLT DLSLCLVAAG LMKYYHAAP

Type	Start	End	Confidence
Cytoplasmic	1	158	0.96
Transmembrane Helix	159	179	0.88
Non-Cytoplasmic	180	196	0.87
Transmembrane Helix	197	217	0.87
Cytoplasmic	218	233	0.73
Transmembrane Helix	234	248	0.44
Non-Cytoplasmic	249	263	0.49
Transmembrane Helix	264	285	0.74
Cytoplasmic	286	289	0.60