YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44981217
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQLKTFPSY GSERMVVEPV SDHRRRRSSS IISHVEPETF EEENDQQLLP NMNATWVEQR  60
   61 GAWGIHVVII VLLKVFYNLV PGLSNEWSWT MTNMTYVVGS YIMFHLMKGT PFEFNGGAYD 120
  121 NLTMWEQLDN GMLYTPTRKF LISVPIALFL LSTHYTRYDL QLFVLNFVLT TMVAVVPKLP 180
  181 LTHRVRISIP GITGPAQIG

Type	Start	End	Confidence
Cytoplasmic	1	61	0.77
Transmembrane Helix	62	80	0.88
Non-Cytoplasmic	81	88	0.56
Transmembrane Helix	89	107	0.65
Cytoplasmic	108	136	0.53
Transmembrane Helix	137	155	0.68
Non-Cytoplasmic	156	161	0.54
Transmembrane Helix	162	181	0.83
Cytoplasmic	182	199	0.74