YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45185488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAFVRVGA EPSLPMYVLL VILNIVLSNA LDVDFNSSES ICDATKLIQV GILDYYEGLR  60
   61 PGGRVGFFQK PYYWWMAGEA FGGMVENWYL CNNTEYQDLL TDAMVSQIGE NKDYVPSHQK 120
  121 MIEGNDDQGI WGLLVMGAAE RNFPDAPPER APGWLALAQA VFNTMWARWD PENCGGGLRW 180
  181 QIFPWNNGYD YKNTISNACL FQIAARLARF TGNSTYQDVA ETVFDWLVDS KLVQLENDAK 240
  241 VLDGAHISER CEDHSKLEWT YNHGVVLAGC AYMYNITNGS AVWGDRLNKV LNGSLLFFPN 300
  301 GILYERACQD VQKCNDDQRS FRSIFSRMLA LTSVLAPHTK ARIEPNIRKS AEAAAKSCSG 360
  361 GRDGHTCGMV WRNYTWDGKY GLGEQLSALE IIQNTLIHTK PPPTTANEGA KSKGDPSAGL 420
  421 YDNSPNIITL STRQIGLKDR VGAGFMTVVL LIPFITGSIW MSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	440	0.70
Transmembrane Helix	441	461	0.89
Cytoplasmic	462	463	0.53