YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44981205, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVLLVILNI VLSNALDVDF NSSESICDAT KLIQVGILDY YEGAKPGGRA GFLVKPYYWW  60
   61 MAGEAFGGMV ENWYLCNNTE YQDLLTDAMV SQIGENKDYM PSHQKMVEGN DDQGIWGLLV 120
  121 MGAAERNFPD APPERAPGWL ALAQAVFNTM WARWDPENCG GGLRWQIFPW NGGYDYKNTI 180
  181 SNACLFQIAA RLARFTGNST YQDVAETVFD WLVDVKLVEL ENDARVLDGA HISERCEDHS 240
  241 QLEWTYNHGV VLGGCAYMYN ITNGSAVWGD RLNKVLNGSL LFFENGILYE RACQDVNKCN 300
  301 DDQRSFRSIF SRMLALTSVL APHTKARIEP NIRKSAEAAA KSCSGGRDGH TCGMVWRNYT 360
  361 WDGKYGLGEQ LSALEIIQNT LIHTKPPPTT ANEGAKSQGD PGAGLQLSSP NSITLPTRQI 420
  421 RLKDRVGAGF ATVVFLLPFI TGSIWMSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	425	0.65
Transmembrane Helix	426	446	0.90
Cytoplasmic	447	448	0.47