YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45185309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFPPPGNYF FLVPWIAVIP WCGMLIAMLV CWSVQGHPIY WFMDGDQFPV YISDIGATNL  60
   61 QPLFVTCVAW QGLWYCIMVA CEFFQRSGHW PLPWLARQRL PADVEPVSSS SYMGSELSMR 120
  121 VRYAELLSSS RFLMPPYYTK HERNLIFASF VLGLIGELAI LMCAIFSTAK FHKVHLSMVG 180
  181 VFVSMMYFSI LCAAIEYLSM GRHYARLHPL AGSAAHVGSA SSRHGHVWNK LTVSGTVKMV 240
  241 LLFLAAAWAI CFGAVKTPSI SASFEWVLAF WLCAYYVIVS VDFYMGSRYK ESKYFHQITN 300
  301 FSGYYKYDQL VLGEAKLHVE RVGHDAGQDY RGNTPVDIVT

Type	Start	End	Confidence
Cytoplasmic	1	10	0.75
Transmembrane Helix	11	34	0.90
Non-Cytoplasmic	35	59	0.73
Transmembrane Helix	60	81	0.71
Cytoplasmic	82	144	0.85
Transmembrane Helix	145	168	0.91
Non-Cytoplasmic	169	175	0.71
Transmembrane Helix	176	198	0.90
Cytoplasmic	199	234	0.79
Transmembrane Helix	235	256	0.85
Non-Cytoplasmic	257	266	0.65
Transmembrane Helix	267	286	0.92
Cytoplasmic	287	340	0.92