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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44980886
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQKVYGVT GPISKEGPTA AENKLNDELI QELKKEGTFE SEEETAKRIK VLEELQALAQ  60
   61 EFVFKVSRKR NMSEGMARDA GGKIFTFGSY RLGVHGPGSD IDTLVVVPKH VTRDDFFTVF 120
  121 DELLRARPEL DEIAPVPEAF VPIIKIKYSG ISIDLICARL DIPQVPLNLT LSDKNLLRNL 180
  181 DEKDLRALNG TRVTDEILEL VPKPTAFKIA LRAIKLWAQR RAVYANVFGF PGGVAWAMLV 240
  241 ARICQLYPNA CSAVIVARFF HILTRWSWPQ PVLLKPIEDG PLQVRVWNPK IYANDRLHKM 300
  301 PVITPAYPSM CSTHNICEST KKVILNELQR GVEVTTDIFT NKKTWGDLFQ KHDFFYKYKF 360
  361 YLTVMASTKG SDEQHLKWSG LVESKLRLLV LKLEVLSGIN LAHPYTKPFE STYAYKTEEQ 420
  421 YKEIFDNYGT HKTEDVLKKY TEVTNENKDD ESLKGMEKVH ITTMYIGLNI AVDEKKKIDI 480
  481 HVPCQEFFNL CRSFQEYEDT ETFSLVIKYV KLYDLPDHVY DEGEQRPVKA SKKRKNEKAG 540
  541 KKAKRPKSSS VLAADAEDST MADGSTVSEE PQPPLSNTTA PSTNTGAELS VAAGGAST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle