YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45184990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVRRERSR FLWVQLSLCP VIIVVGTVMR IFSEPNSWNA DKDSTVNIWF IKQGWAWTSA  60
   61 VCWWCVVRYK GLGGRSLRQT ALRYVALTAW WYAFTQAIWF GIAPIMDQVF TSTGGHCSFD 120
  121 VFDTGMGLNS GFHDSEGRRT RSLQKLLQWF TAHGAQGDEL RERTMYWIRC MLTGGQCENT 180
  181 GLDPTELNSY IQDSVTASAI RSSHACSRLG GHWMGGHDPS GHVFLITLMC MFMLGELQVF 240
  241 GRRAIGKLSA DCQQLQGAPG KIVARILQAS PIRELINSEA PQHILRRLFV QLPLESLAIL 300
  301 VSAVVFGFRF IVLENPILLL VGLILTWTWS LLVTILSFHS FAEHLTGLLF AYLLVLALYW 360
  361 YI

Type	Start	End	Confidence
Cytoplasmic	1	10	0.98
Transmembrane Helix	11	32	0.94
Non-Cytoplasmic	33	48	0.94
Transmembrane Helix	49	67	0.88
Cytoplasmic	68	83	0.75
Transmembrane Helix	84	103	0.90
Non-Cytoplasmic	104	219	0.97
Transmembrane Helix	220	240	0.92
Cytoplasmic	241	288	0.96
Transmembrane Helix	289	311	0.80
Non-Cytoplasmic	312	316	0.65
Transmembrane Helix	317	336	0.84
Cytoplasmic	337	343	0.53
Transmembrane Helix	344	361	0.90
Non-Cytoplasmic	362	362	0.75