YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNS1_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.99
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	142	0.92
Transmembrane Helix	143	164	0.95
Cytoplasmic	165	170	0.86
Transmembrane Helix	171	192	0.93
Non-Cytoplasmic	193	198	0.72
Transmembrane Helix	199	218	0.94
Cytoplasmic	219	241	0.90
Transmembrane Helix	242	265	0.91
Non-Cytoplasmic	266	285	0.90
Transmembrane Helix	286	305	0.82
Cytoplasmic	306	310	0.71
Transmembrane Helix	311	328	0.87
Non-Cytoplasmic	329	345	0.84
Transmembrane Helix	346	367	0.92
Cytoplasmic	368	384	0.68
Transmembrane Helix	385	406	0.72
Non-Cytoplasmic	407	448	0.58
Transmembrane Helix	449	472	0.85
Cytoplasmic	473	481	0.50
Transmembrane Helix	482	503	0.89
Non-Cytoplasmic	504	553	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGKSGPPPE GYVPQHPPAQ GYAPHNPPPG YVHENPFQEP VPQGQEYSPQ GQQYQFRKDQ  60
   61 YYNLDHQGSG APIGDASFED KFPTEAGNRL KFNDWPFTII FLLTVGAFIA VAVLTLRGWS 120
  121 LSPTSNGSGI YDGDNTHTLN TNAAILLLIS CGVAVALSVF GLVLAGMYTK FFIYAAMILN 180
  181 TVVGLGTAIT YLVLRHWSAG IVFMIFTILT AVCYWLMRSR IPFSVAVLRT VMSVMKKHPQ 240
  241 TWLVSLLGTI VSAAFSVIFS VVLVATYIKY DPKSENGGCD VSGGSCSRGK LIGILVLVFF 300
  301 CGFYISEVIR NVIHCTIAGI YGCWYYFSKS DQGMPRWPAF GSLKRALTTS FGSICFGSLI 360
  361 VSLIQLLRQI IQLLRNGIIS GISDSGWMQC LWLILDAVVG VFEWMAEYFN HYAYCFIALY 420
  421 GKPYLRAAKE TWHMLREKGI DALINDNLIN LALGFYTLFV GYTTALFSYL FLRFTKPDYN 480
  481 SGGGFNAVLM AFSFLIAIQL THVATETIRS GTATFFVALG NDPEIFRVSY PQRFDEIFRA 540
  541 YPDVLNKLSH QHV