YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45184758, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNHTYSDIG VRLAPRFLPD VSFMDDVVAP LTAVKPRPTL VPGISDGHLS LLAPVLAYWV  60
   61 FSGLFHVMDT LRLAEKYRIH PSEEVASRNR AGRLDVLAQV VLQHIIQTLT GLVLVYYDGE 120
  121 PQTGMEQLAM WRWRQAAPGW VSNEAIYVAY HYGLSVAKLL VGFFLIDTWQ FWLHYLMHMN 180
  181 KTLYRKFHAH HHRLYVPYAY GALYNNPVEA FVLDSCGTAL AALVTRMTHR EEMLLYTFAT 240
  241 MKTVDDHCGY ALPWDPFQWL FPNNAVYHDI HHQNFGIKSN FAQPFFTIWD SFCRTKFPQF 300
  301 EEYEKKQRRV TVDRYKQFLA ERQMEREAKL TLLSKKLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.67
Transmembrane Helix	48	68	0.70
Cytoplasmic	69	95	0.74
Transmembrane Helix	96	116	0.51
Non-Cytoplasmic	117	147	0.69
Transmembrane Helix	148	173	0.71
Cytoplasmic	174	338	0.79