YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44980100, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEELVSYLS GTDVTHTGIR RDKTLQDVDL SAISRLRISE PGVSQCARER STISEEYRCK  60
   61 LQPYFSTTPS PLRQTIVAES DDEMDIDPAE SVEAERTDAE QLEDVLQDEE PEEDARASSS 120
  121 GHRGSVIKAL LSPTTLGVAA ATKELEDLAA PAAPPPVPAA AAAAPLRSAP ALGEQELQEL 180
  181 RHNFNTRPLQ VQVNHHHYYP GFAPYGAQSA HDPYDLPQPW SERSRPASKH TYAFTSYLQL 240
  241 ALNVLTVFAI SSLALSFLRA LKTDLQSTWR HNKLELDYES QACRQSYDAN LCDPATRVPA 300
  301 LYEQCAQWEK CMSRDNNIFF RARSTLSARL VGDVINSFIE PLGWKALLSI LIGLLIWCFS 360
  361 SNFLLGFARA KSYYGSPLAL AAPPAASPRQ ITASQGSPER DLAISTALAS APRLRER

Type	Start	End	Confidence
Cytoplasmic	1	232	0.57
Transmembrane Helix	233	258	0.71
Non-Cytoplasmic	259	345	0.63
Transmembrane Helix	346	367	0.89
Cytoplasmic	368	417	0.69