YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44979987
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKTLPLYS KATLQKHTDR TSCWVSVGNR KIYDVSQFLD EHPGGDQYIL DYAGKDITAV  60
   61 LKDKLIHEHT EAAYEILDES YLVGYLATEE EEIKLLTNEK HVMEVTPENL DTTTFVKELP 120
  121 AEEVLSVATD FGTDYTKHHF LDLNKPLLMQ VLRGNFTRDF YIDQIHRPRH YGKGSAPLFG 180
  181 NFLEPLSKTV WWVVPMVWYP VVLYYLTRAL QNMPAHLALT CFAAGVFVWT LIEYSLHRFL 240
  241 FHFDDNMPES NIAFTVHFLL HGVHHYLPMD KYRLVMPPAL FVVLCAPFYR LVFSIFPEYC 300
  301 ACGCFAGGLF GYVCYDVTHY FLHHHKLPPF MRKLKKYHLE HHYKNYELGF GVTSWYWDKV 360
  361 FGTYLASNSP VSRPKCE

Type	Start	End	Confidence
Cytoplasmic	1	188	0.53
Transmembrane Helix	189	207	0.80
Non-Cytoplasmic	208	213	0.38
Transmembrane Helix	214	236	0.85
Cytoplasmic	237	273	0.40
Transmembrane Helix	274	293	0.83
Non-Cytoplasmic	294	298	0.48
Transmembrane Helix	299	322	0.78
Cytoplasmic	323	377	0.66