YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15603048, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFENLSDRLS KTLRNISGRG RLTEDNIKET LREVRMALLE ADVALPVVRD FINKVKERAI  60
   61 GVEVNKSLTP GQEFVKIVQA ELEAAMGEAN ESLHLSTQPP AVILMAGLQG AGKTTSVGKL 120
  121 AKFLKERHKK KVLVVSADVY RPAAIKQLET LAQAVGADFF PSDVSQNPVQ IAQAALSEAK 180
  181 LKFYDVLIVD TAGRLHVDGE MMDEIKQIHA ALNPIETLFT VDAMTGQDAA NTAKSFNEAL 240
  241 PLTGVVLTKV DGDARGGAAL SIRQITGKPI KFLGVGEKTD ALEPFHPERV ASRILGMGDV 300
  301 LSLIEDLERS VDREKAEKMA QKFKKGDNFT LEDFREQLIQ MKNMGGMMSM LDKLPGAKNL 360
  361 PDHIKNKVDD KMFSKMEAMI NSMTLKERAN PEIIKGSRRR RIAMGSGTQV QDVNKLLKQF 420
  421 DEMQRMMKKM RKGGMAKMMR GMQGMMGGLG GLGGMFRR

Type	Start	End	Confidence
Cytoplasmic	1	435	0.57
Transmembrane Helix	436	456	0.57
Non-Cytoplasmic	457	458	0.91