YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12721397, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.79
Transmembrane Helix	29	48	0.87
Non-Cytoplasmic	49	60	0.61
Transmembrane Helix	61	79	0.88
Cytoplasmic	80	88	0.64
Transmembrane Helix	89	112	0.86
Non-Cytoplasmic	113	142	0.76
Transmembrane Helix	143	164	0.85
Cytoplasmic	165	180	0.59
Transmembrane Helix	181	199	0.55
Non-Cytoplasmic	200	222	0.60
Transmembrane Helix	223	244	0.87
Cytoplasmic	245	251	0.64
Transmembrane Helix	252	273	0.78
Non-Cytoplasmic	274	278	0.60
Transmembrane Helix	279	302	0.87
Cytoplasmic	303	320	0.52
Transmembrane Helix	321	344	0.89
Non-Cytoplasmic	345	633	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVILSTRLTM LSANAKVKVQ NFGRFLSNMV MPNIGAFIAW GFITALFIPT GWLPNETLAK  60
   61 LVGPMITYLL PLLIGYSGGK LIAGERGAVV GAIATAGVIV GTDIPMFLGA MIAGPTGGWA 120
  121 IKRFDKWADG KIKSGFEMLV NNFSSGIIGM ILAILFFWLI GPAVKALSTM LAAGVDILVK 180
  181 AHLLPLTSIF VEPAKILFLN NAINHGIFSP LGIQQSQEFG QSIFFLIEAN PGPGLGVLLA 240
  241 YIIFGKGTAK QTAGGATIIH FFGGIHEIYF PYVLMNPRLL LAVIAGGVSG VFTLVLFNAG 300
  301 LVAPASPGSI IAVLLMTPQN AIVGVLASVA IAATVSFVIA SFFLKIQKEE NGHSLEKMQA 360
  361 ASKAMKSGVQ FNTPARYQGV QKIFVACDAG MGSSAMGASM LRKKVKEAGL AIEVTNCAIN 420
  421 DLPEDAQLVI THQDLTLRAK KHTPNAMHFS LNNFLDAHFY DNLVQDLSNT KVADLAKVST 480
  481 LEPQEAPQTA FVLTEKQVFL GLKAANKEEA IRFAGERLVE SGFVLPSYVD AMFEREKMVS 540
  541 TYLGEGIAVP HGTIEAKDAV LKTGVVVCQY PEGVKFNEDE EDSIAKLVIG IAAKNNEHLQ 600
  601 VVSAITNALD NEDAIRILSE TDDVEKVLAL LKA