YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15602617, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.91
Transmembrane Helix	6	25	0.92
Cytoplasmic	26	31	0.94
Transmembrane Helix	32	51	0.94
Non-Cytoplasmic	52	56	0.80
Transmembrane Helix	57	76	0.94
Cytoplasmic	77	86	0.91
Transmembrane Helix	87	108	0.93
Non-Cytoplasmic	109	140	0.95
Transmembrane Helix	141	162	0.91
Cytoplasmic	163	176	0.90
Transmembrane Helix	177	195	0.91
Non-Cytoplasmic	196	200	0.80
Transmembrane Helix	201	220	0.90
Cytoplasmic	221	228	0.69
Transmembrane Helix	229	248	0.84
Non-Cytoplasmic	249	252	0.73
Transmembrane Helix	253	273	0.90
Cytoplasmic	274	474	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGLVQAAY IVAALLFIMS LAGLSKHETA KAGCWYGIVG MAIALVATIF GPQSAGTFWI  60
   61 LIAMAVGAVI GIKRALKVEM TEMPELVAIL HSFVGLAAVL VGFNSYGLHH EAVMPANLDA 120
  121 AAQAAFIAEQ QVLSNIHNVE VFLGIFIGAV TFTGSVVAFG KLRGIIDSKA LTLPHRHKLN 180
  181 LAAIVVSALL MVSFLNSPEN IFPVLLMTAI ALAFGWHLVA SIGGADMPVV VSMLNSYSGW 240
  241 AAAAAGFMLS NDLLIVTGAL VGSSGAILSY IMCKAMNRSF ISVIAGGFGN DPVASSDEEQ 300
  301 GEHRETTAEE VAELLKNSSS VIITPGYGMA VAQAQYPVAE ITQKLRERGI NVRFGIHPVA 360
  361 GRLPGHMNVL LAEAKVPYDI VLEMDEINDD FADTDTVLVI GANDTVNPAA MDDPNSPIAG 420
  421 MPVLEVWKAQ NVIVFKRSMN TGYAGVQNPL FFKDNTQMLF GDAKDRVDDI LKAL