YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15602138, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	33	0.90
Non-Cytoplasmic	34	53	0.87
Transmembrane Helix	54	75	0.91
Cytoplasmic	76	85	0.82
Transmembrane Helix	86	107	0.91
Non-Cytoplasmic	108	112	0.77
Transmembrane Helix	113	131	0.91
Cytoplasmic	132	138	0.73
Transmembrane Helix	139	162	0.89
Non-Cytoplasmic	163	169	0.90
Transmembrane Helix	170	193	0.91
Cytoplasmic	194	213	0.92
Transmembrane Helix	214	235	0.89
Non-Cytoplasmic	236	239	0.85
Transmembrane Helix	240	259	0.90
Cytoplasmic	260	273	0.85
Transmembrane Helix	274	293	0.93
Non-Cytoplasmic	294	309	0.90
Transmembrane Helix	310	329	0.90
Cytoplasmic	330	334	0.73
Transmembrane Helix	335	357	0.82
Non-Cytoplasmic	358	366	0.57
Transmembrane Helix	367	385	0.83
Cytoplasmic	386	398	0.64
Transmembrane Helix	399	420	0.88
Non-Cytoplasmic	421	427	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIALFILL FLLMFLGVPI AISLGLSGAI VIMLFSQDSL SSLAIKLFET SEHYTLLAIP  60
   61 FFLLAGAFMT TGGVAKRLID FANATVGHIR GGLAIASVMS CMLFAALSGS SPATVAAVGS 120
  121 IAIAGMVRSG YPIGFGTGII CNAGTLGILI PPSVVMVVYA AATETSVGKL FMAGVVPGLL 180
  181 LGVALMVAIY IVARIKNLPA QPRASVKEWF RAARKAIWGL LLMVIILGGI YSGIFTPTEA 240
  241 AAVAAVYSFV VAVFIYKDIK LSECPRVLLE SGKLSVMLMF IIANAMLFAH VLTTEQIPQL 300
  301 ITETVTKMEL SPWMFLIVVN IVLLIAGAFM EPSAIILILA PILFPIAVQL GIDPIHLGVI 360
  361 MVVNMEIGMI TPPIGLNLFV ASAVSKMPLT AVIRAATPWL MLLLAFLIAI TYIPAISMAL 420
  421 PNWMGIH