YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15601997, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.64
Transmembrane Helix	5	22	0.70
Cytoplasmic	23	52	0.95
Transmembrane Helix	53	74	0.89
Non-Cytoplasmic	75	79	0.75
Transmembrane Helix	80	104	0.85
Cytoplasmic	105	124	0.89
Transmembrane Helix	125	145	0.94
Non-Cytoplasmic	146	174	0.83
Transmembrane Helix	175	193	0.93
Cytoplasmic	194	204	0.76
Transmembrane Helix	205	225	0.93
Non-Cytoplasmic	226	258	0.95
Transmembrane Helix	259	280	0.91
Cytoplasmic	281	296	0.93
Transmembrane Helix	297	320	0.91
Non-Cytoplasmic	321	344	0.96
Transmembrane Helix	345	368	0.91
Cytoplasmic	369	388	0.94
Transmembrane Helix	389	410	0.90
Non-Cytoplasmic	411	418	0.76
Transmembrane Helix	419	439	0.89
Cytoplasmic	440	445	0.78
Transmembrane Helix	446	465	0.96
Non-Cytoplasmic	466	475	0.81
Transmembrane Helix	476	496	0.94
Cytoplasmic	497	514	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFFFCVAI LVLGYFVYGK FIEKIFVINP KKATPAYTMN DGVDYMPMST KKIWLIQLLN  60
   61 IAGTGPIFGP ILGALYGPVA MLWIVIGCIF AGAVHDYFCG MLSVRNGGAS MPTLAGRYLG 120
  121 APVKAFINML AVVLLLLVGV VFVASPAKLL STITMDNLGV VESAGAAATV FGYDAATVLV 180
  181 IWTTIIFVYY IIATLLPIDK IIGRIYPLFG ALLLFMTFGM MFGLVSSHLN SNEPIEFFRT 240
  241 VGGLEVGKFF ENLQPKGDLP IWPLLFLTIS CGALSGFHAT QSPLMARCAQ NEKEGRFIFY 300
  301 GAMIAEGVIA LVWCAVGLSF YQDPTELQAA IAAGSPSKVV YDSSIYFLGA VGGVFAILGV 360
  361 VVLPITSGDT AFRAARLIIA EFFKFEQKTL VKRLVIAVPL FVLGFIVSKI DFSVLWRYFS 420
  421 WANQTTAMVM LWTAAAYLFR YGKFHWVCTL PAMFISTVCF TYLAYNKIGF NLDYQLSVYI 480
  481 GIGLTVFCTV LFFTLLKPIA KGDPDALVDD LVKQ