YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32816615
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	50	0.96
Transmembrane Helix	51	71	0.94
Cytoplasmic	72	83	0.85
Transmembrane Helix	84	104	0.96
Non-Cytoplasmic	105	126	0.94
Transmembrane Helix	127	147	0.95
Cytoplasmic	148	239	0.96
Transmembrane Helix	240	259	0.83
Non-Cytoplasmic	260	267	0.75
Transmembrane Helix	268	288	0.81
Cytoplasmic	289	297	0.78
Transmembrane Helix	298	321	0.89
Non-Cytoplasmic	322	328	0.88
Transmembrane Helix	329	350	0.90
Cytoplasmic	351	367	0.87
Transmembrane Helix	368	387	0.92
Non-Cytoplasmic	388	390	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTNTTDTVL LAAAVALLLA TAARGDGGDG GCGKEDAAAG RDRARARGLK IAAFFSILVC  60
   61 GALGCGLPSL GRHVPALRPD GDVFFLVKAF AAGVILATGF IHILPDAFDN LTDDCLPAGG 120
  121 PWKEFPFAGF GAMVGAIGTL VVDTLATGYF TRALSKKDAA TAAAVADEEK QSAAATQQHN 180
  181 HHHNHHVVGD GGGGGEEHEG QVHVHTHATH GHAHGSSALV AAVGEDDKET TLRHRVISQV 240
  241 LELGIVVHSV IIGISLGASQ NPETIKPLVV ALSFHQMFEG MGLGGCIVQA KFKVRSIVTM 300
  301 VLFFCLTTPV GIAVGVGISS VYNESSPTAL VVEGILNSVA AGILIYMALV DLLAEDFMNP 360
  361 RVQSKGKLQL GINLAMLAGA GLMSMLAKWA